download_encode_tf: Helper function for obtaining transcription factor data...
In ArnaudDroitLab/ef.utils: Eric Utilities

Helper function for obtaining transcription factor data through download_encode_chip.

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download_encode_tf(biosample, assembly,
  download.dir = file.path("input/ENCODE", biosample, assembly, "chip-seq",
  "tf"), ...)

`biosample`	The biosample identifier from ENCODE. Valid examples are GM12878, K562 or MCF-7.
`download.dir`	The folder where the downloaded files should be stored. defaults to `file.path("input/ENCODE", biosample, assembly, "chip-seq", "tf")`.
`...`	Other parameters to be passed to download_encode_chip.
`genome.assembly`	Which genome assembly should the results come from?

A list containing three elements:

Metadata: The metadata returned by queryEncode, containing information about all files which matched the query.
Downloaded: The list of files which were downloaded.
Regions: The processed peak regions.