Files in ArnaudDroitLab/ef.utils
Eric Utilities
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AnnotationHelper.R
R/CsawAnalysis.R
R/EncodeHelper.R
R/ImportHelper.R
R/IntersectionHelper.R
R/sysdata.rda
eric.utils.Rproj
inst/extdata/guillimin/peak_call/GM12878_CDK9_Rep1_2WCE_Narrow_Peaks/GM12878_CDK9_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/guillimin/peak_call/GM12878_CDK9_Rep2_2WCE_Narrow_Peaks/GM12878_CDK9_Rep2_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/guillimin/peak_call/GM12878_MED1_Rep1_2WCE_Narrow_Peaks/GM12878_MED1_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/bed/GM12878_CDK9_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/bed/GM12878_CDK9_Rep2_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/bed/GM12878_MED1_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/narrow/GM12878_CDK9_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/narrow/GM12878_CDK9_Rep2_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/narrow/GM12878_MED1_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
man/annotate_chip.Rd
man/annotate_region.Rd
man/annotate_venn_center.Rd
man/annotate_venn_exclusive.Rd
man/associate_chrom_state.Rd
man/associate_fitness_genes.Rd
man/associate_gene_chip.Rd
man/associate_genomic_region.Rd
man/associate_histone_marks.Rd
man/associate_is_gene_active.Rd
man/associate_tf.Rd
man/associate_tissue_specificity_human.Rd
man/build_intersect.Rd
man/build_intersect_all.Rd
man/characterize_gene_set.Rd
man/characterize_region.Rd
man/chrom_state_match.Rd
man/collapse_regions.Rd
man/csaw.save.plots.Rd
man/csaw_analyze.Rd
man/default_download_filter_chip.Rd
man/default_download_filter_rna.Rd
man/download.one.chrom.state.Rd
man/download_chromatin_states.Rd
man/download_encode_chip.Rd
man/download_encode_histones.Rd
man/download_encode_polymerases.Rd
man/download_encode_rna.Rd
man/download_encode_tf.Rd
man/exclusive.overlap.internal.Rd
man/filter.reads.to.counts.Rd
man/gene_from_regions.Rd
man/gene_peaks_distances.Rd
man/get.chrom.state.url.Rd
man/get_encode_mnemonic.Rd
man/get_promoters.Rd
man/histone_download_filter_chip.Rd
man/import.and.discard.metadata.Rd
man/import_chrom_states.Rd
man/import_files_into_grl.Rd
man/import_into_grl.Rd
man/inclusive.overlap.internal.Rd
man/install_annotations.Rd
man/intersect_overlap.Rd
man/intersect_venn_plot.Rd
man/isoform_download_filter_rna.Rd
man/kegg_enrichment.Rd
man/kegg_enrichment_regions.Rd
man/load_chrom_state.Rd
man/motif_enrichment.Rd
man/motif_enrichment_genes.Rd
man/multiple.testing.Rd
man/multiple_keggs_plot.Rd
man/multiple_region_enrichment.Rd
man/normalization.factors.Rd
man/pairwise_overlap.Rd
man/partition_genomic_regions.Rd
man/pol2_download_filter_chip.Rd
man/post_processing.Rd
man/project_ranges.Rd
man/read_identical.Rd
man/reads.to.counts.Rd
man/region_consensus.Rd
man/region_enrichment.Rd
man/region_enrichment_summary.Rd
man/region_overlap.Rd
man/select_annotations.Rd
man/simple_chrom_state_map.Rd
man/simplify_chrom_state.Rd
man/test.diff.binding.Rd
tests/unit.tests.R
