test_annotation_score_data: A toy PvalueAnnotation

In AJEinstein/SMITE: Significance-based Modules Integrating the Transcriptome and Epigenome

Description

This Pvalue annotation has only scoring data filled in to use in late pipeline "SMITE" functions. It can be used to skip the loading data phase of analysis and test latter functionality.

Usage

data("test_annotation_score_data")

Format

A PvalueAnnotation with the following slots

score_data

a PvalueObject with slots corresponding to pval_data, effect_data, genes, signs_index, scores, trans, scoring_vector, and module_otuput

Details

This is a PvalueAnnotation which has had all of the pre-scoring data removed so that it is only usefule for using functions beginning with SMITE and SMITE plotting functions.

Value

A PvalueAnnotation with the score_data slot containing toy scores

Examples

data(test_annotation_score_data)
plotDensityPval(test_annotation)
head(extractScores(test_annotation))

AJEinstein/SMITE documentation built on Oct. 23, 2021, 7:44 a.m.