extractModules: View specific modules within a PvalueAnnotation

In AJEinstein/SMITE: Significance-based Modules Integrating the Transcriptome and Epigenome

Description

Having identfied modules within a Pvalue annotation, this function allows the user to display 1 or more of the module genes.

Usage

extractModules(pvalue_annotation, which_module = NULL)

Arguments

pvalue_annotation	An S4 object of class PvalueAnnotation for which Spinglass or BioNet has already been run.
which_module	A numeric vector specifying one or more module to display

Value

A list with each element containing the requested modules

Author(s)

N. Ari Wijetunga

See Also

plotModule runGOseq extractGOseq runSpinglass runBioNet

Examples

data(test_annotation_score_data)

extractModules(pvalue_annotation=test_annotation, which_module=1)

AJEinstein/SMITE documentation built on Oct. 23, 2021, 7:44 a.m.