hapVsPhenoPerSite: hapVsPhenoPerSite

In geneHapR: Gene Haplotype Statistics, Phenotype Association and Visualization

hapVsPhenoPerSite

Description

Comparie phenotype site by site.

Usage

hapVsPhenoPerSite(
  hap,
  pheno,
  phenoName,
  sitePOS,
  fileName,
  fileType = NULL,
  freq.min = 5,
  ...
)

Arguments

hap	an R object of hapresult class
pheno, phenoName	pheno, a data.frame contains the phenotypes; Only one phenotype name is required.
sitePOS	the coordinate of site
fileName, fileType	file name and file type will be needed for saving result, file type could be one of "png, tiff, jpg"
freq.min	miner allies frequency less than freq.min will not be skipped
...	addtional params will be passed to plot saving function like tiff(), png(), pdf()

Examples

data("geneHapR_test")
hapVsPhenoPerSite(hapResult, pheno, sitePOS = "4300")

geneHapR documentation built on May 29, 2024, 11:59 a.m.