getGenePOS: Get Gene Position
In geneHapR: Gene Haplotype Statistics, Phenotype Association and Visualization

getGenePOS

R Documentation

Get Gene Position

Description

Get Gene Position

Usage

getGenePOS(gff= gff,
           geneID = geneID,
           type = type,
           gffTermContaingeneID = "Parent")

Arguments

`gff`	imported gff
`geneID`	target geneID
`type`	vector consist with one or more types in gff
`gffTermContaingeneID`	which term contains the geneID in your gff, defalt is Parent

Value

named vectors contains start, end and strand

Examples

data("geneHapR_test")
genePOS <- getGenePOS(gff = gff,
           geneID = "test1G0387",
           type = "CDS",
           gffTermContaingeneID = "Parent")

geneHapR documentation built on May 29, 2024, 11:59 a.m.