plotBoxplot: Box Plots for Device

In xps: Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays

Description

Produce box-and-whisker plot(s) of the samples for the selected device.

Usage

plotBoxplot(x,
            which   = "",
            size    = 0,
            transfo = log2,
            range   = 0,
            names   = "namepart",
            mar     = NULL,
            las     = 2,
            cex     = 1.0,
            dev     = "screen",
            outfile = "BoxPlot",
            w       = 800,
            h       = 540,
            ...) 

Arguments

x	object of class DataTreeSet or ExprTreeSet.
which	type of probes to be used, for details see validData.
size	length of sequence to be generated as subset.
transfo	a valid function to transform the data, usually log2, or 0.
range	determines how far the plot whiskers extend out from the box.
names	optional vector of sample names.
mar	plot margin.
las	style of axis labels.
cex	amount by which plotting text and symbols should be magnified.
dev	graphics device to plot to, i.e. one of “screen”, “jpeg”,“png”, “pdf” or “ps”.
outfile	the name of the output file.
w	the width of the device in pixels.
h	the height of the device in pixels.
...	optional arguments to be passed to boxplot.

Details

Produces a boxplot for slot data for an object of class DataTreeSet, ExprTreeSet or QualTreeSet for the selected graphics device.

Author(s)

Christian Stratowa

See Also

boxplot, plotBorder, plotNUSE, plotRLE

xps documentation built on Nov. 8, 2020, 6 p.m.