summary_accuracy: get percent accuracy for Lasso model, from 'n' bootstraps

In scGPS: A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

Description

The training results from training were written to

Usage

summary_accuracy(object = NULL)

Arguments

object

is a list containing the training results from the summary_accuracy summarise n bootstraps

Value

a vector of percent accuracy for the selected subpopulation

Author(s)

Quan Nguyen, 2017-11-25

Examples

c_selectID<-1
day2 <- day_2_cardio_cell_sample
mixedpop1 <-new_scGPS_object(ExpressionMatrix = day2$dat2_counts, 
    GeneMetadata = day2$dat2geneInfo, CellMetadata = day2$dat2_clusters)
day5 <- day_5_cardio_cell_sample
mixedpop2 <-new_scGPS_object(ExpressionMatrix = day5$dat5_counts, 
    GeneMetadata = day5$dat5geneInfo, CellMetadata = day5$dat5_clusters)
genes <-training_gene_sample
genes <-genes$Merged_unique
LSOLDA_dat <- bootstrap_prediction(nboots = 1,mixedpop1 = mixedpop1, 
    mixedpop2 = mixedpop2, genes=genes, c_selectID, listData =list(),
    cluster_mixedpop1 = colData(mixedpop1)[,1],
    cluster_mixedpop2=colData(mixedpop2)[,1])
summary_accuracy(LSOLDA_dat)
summary_deviance(LSOLDA_dat)

scGPS documentation built on Nov. 8, 2020, 5:22 p.m.