plot_CV_distr.df: Plot the distribution (boxplots) of per-batch per-step CV of...

In proBatch: Tools for Diagnostics and Corrections of Batch Effects in Proteomics

Description

Plot the distribution (boxplots) of per-batch per-step CV of features

Usage

plot_CV_distr.df(
  CV_df,
  plot_title = NULL,
  filename = NULL,
  theme = "classic",
  log_y_scale = TRUE
)

Arguments

CV_df	data frame with Total CV for each feature & (optionally) per-batch CV
plot_title	title of the plot (e.g., processing step + representation level (fragments, transitions, proteins) + purpose (meanplot/corrplot etc))
filename	path where the results are saved. If null the object is returned to the active window; otherwise, the object is save into the file. Currently only pdf and png format is supported
theme	ggplot theme, by default classic. Can be easily overriden
log_y_scale	(logical) whether to display the CV on log-scale

Value

ggplot object

proBatch documentation built on Nov. 8, 2020, 4:55 p.m.