Files in microbiomeExplorer

Microbiome Exploration App

README.md R/feature_functions.R R/differential_functions.R R/long_analysis_module.R R/long_module.R R/inter_functions.R R/globals.R R/report_module.R R/feature_main_module.R R/corr_input_module.R R/corr_analysis_module.R R/corr_module.R R/inter_module.R R/intra_analysis_module.R R/feature_analysis_module.R R/diff_module.R R/intra_functions.R R/intra_module.R R/phenotype_module.R R/longitudinal_functions.R R/inter_analysis_module.R R/feature_input_module.R R/aggregation_module.R R/diff_input_module.R R/intra_input_module.R R/qc_functions.R R/data_input_module.R R/diff_analysis_module.R R/correlation_functions.R R/functions.R R/inter_input_module.R R/reportRow_module.R R/long_input_module.R R/feature_module.R R/aggreg_norm_functions.R vignettes/exploreMouseData.Rmd man/featureCorr.Rd man/interAnalysis.Rd man/calculatePCAs.Rd man/getWidths.Rd man/makeQCPlot.Rd man/plotlySampleBarplot.Rd man/phenotypeCorr.Rd man/readData.Rd man/featAbundanceUI.Rd man/intraAnalysisUI.Rd man/longInput.Rd man/generateReport.Rd man/aggregationTab.Rd man/aggregationTabUI.Rd man/featureAnalysis.Rd man/getFeatModCode.Rd man/fileUploadUI.Rd man/corrAnalysis.Rd man/intraInput.Rd man/abundanceHeatmapUI.Rd man/add_plotly_layout.Rd man/intraAnalysis.Rd man/featureInputUI.Rd man/addPhenoData.Rd man/plotHeatmap.Rd man/betaDiversityUI.Rd man/reportRowUI.Rd man/addFeatData.Rd man/runMicrobiomeExplorer.Rd man/reportRow.Rd man/featureTable.Rd man/dataInput.Rd man/featureCorrUI.Rd man/getFileType.Rd man/longInputUI.Rd man/featAbundance.Rd man/heatmapInputUI.Rd man/betaInput.Rd man/interAnalysisUI.Rd man/relAbundance.Rd man/diffAnalysis.Rd man/plotLongFeature.Rd man/phenotypeTable.Rd man/dataInputUI.Rd man/featureAnalysisUI.Rd man/getPhenoModCode.Rd man/plotSingleFeature.Rd man/featureInput.Rd man/heatmapInput.Rd man/runDiffTest.Rd man/plotAlpha.Rd man/betaDiversity.Rd man/longResults.Rd man/diffTable.Rd man/phenotypeCorrUI.Rd man/corrPhenotype.Rd man/getLegendLevel.Rd man/rollDownFeatures.Rd man/corrInput.Rd man/plotlyHistogram.Rd man/createHeader.Rd man/plotBeta.Rd man/replaceWithUnknown.Rd man/reportListUI.Rd man/longAnalysis.Rd man/add_plotly_config.Rd man/diffAnalysisUI.Rd man/fileUpload.Rd man/corrInputUI.Rd man/intraInputUI.Rd man/corrFeature.Rd man/buildPlottingDF.Rd man/plotAvgAbundance.Rd man/reportList.Rd man/getFilterChoices.Rd man/betaInputUI.Rd man/alphaDiversityUI.Rd man/avgAbundance.Rd man/longAnalysisUI.Rd man/avgAbundanceUI.Rd man/corrAnalysisUI.Rd man/abundanceHeatmap.Rd man/diffInputUI.Rd man/plotAbundance.Rd man/aggFeatures.Rd man/computeCI_Interval.Rd man/filterMEData.Rd man/diffInput.Rd man/computeDistMat.Rd man/longResultsUI.Rd man/diffTableUI.Rd man/relAbundanceUI.Rd man/extendPhenoData.Rd man/getPhenoChanges.Rd man/normalizeData.Rd man/parseInteractionName.Rd man/phenotypeTableUI.Rd man/buildEmptyPlotlyPlot.Rd man/featureTableUI.Rd man/designPairs.Rd man/alphaDiversity.Rd man/filterByPheno.Rd tests/testthat.R tests/testthat/test-inter_functions.R tests/testthat/test-correlation_functions.R tests/testthat/test-functions.R tests/testthat/test-agg_norm_functions.R tests/testthat/test-differential_functions.R inst/doc/exploreMouseData.Rmd inst/doc/exploreMouseData.R inst/shiny/ui.R inst/shiny/Tutorial.md inst/shiny/server.R inst/shiny/Tutorial.Rmd inst/shiny/global.R