buildPlottingDF: Sets up a dataframe used by several plotting functions by...

In microbiomeExplorer: Microbiome Exploration App

Description

Sets up a dataframe used by several plotting functions by joining the required data with relevant phenotype data

Usage

buildPlottingDF(
  df,
  phenoTable,
  x_var = NULL,
  facet1 = NULL,
  facet2 = NULL,
  col_by = NULL,
  col_name = col_by,
  id_var = NULL
)

Arguments

df	dataframe storing plotting data values
phenoTable	pData of the MRexperiment; all following parameters must be a column of the phenoTable
x_var	main plotting variable
facet1	column-based faceting (can be NULL)
facet2	row-based faceting (can be NULL)
col_by	coloring factor (can be NULL)
col_name	character to be used as name for col_by
id_var	variable used to connect samples longitudinally (can be NULL)

Value

dataframe obtained by joining df and relevant columns of phenoTable

microbiomeExplorer documentation built on Nov. 8, 2020, 8:16 p.m.