get_GS_network: Get genomic sequence network.
In martini: GWAS Incorporating Networks
Description
Usage
Arguments
Value
References
Examples
Description
Creates a network of SNPs where each SNP is connected to its
adjacent SNPs in the genome sequence. Corresponds to the genomic sequence
(GS) network described by Azencott et al.
Usage
1
get_GS_network(gwas)
Arguments
gwas
A SnpMatrix object with the GWAS information.
Value
An igraph network of the GS network of the SNPs.
References
Azencott, C. A., Grimm, D., Sugiyama, M., Kawahara, Y., &
Borgwardt, K. M. (2013). Efficient network-guided multi-locus association
mapping with graph cuts. Bioinformatics, 29(13), 171-179.
https://doi.org/10.1093/bioinformatics/btt238
Examples
1
martini documentation built on Nov. 8, 2020, 5:39 p.m.
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Description Usage Arguments Value References Examples
Description
Creates a network of SNPs where each SNP is connected to its adjacent SNPs in the genome sequence. Corresponds to the genomic sequence (GS) network described by Azencott et al.
Usage
1 | get_GS_network(gwas)
|
Arguments
gwas |
A SnpMatrix object with the GWAS information. |
Value
An igraph network of the GS network of the SNPs.
References
Azencott, C. A., Grimm, D., Sugiyama, M., Kawahara, Y., & Borgwardt, K. M. (2013). Efficient network-guided multi-locus association mapping with graph cuts. Bioinformatics, 29(13), 171-179. https://doi.org/10.1093/bioinformatics/btt238
Examples
1 |
R Package Documentation
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