flowTransResult-class: Class "flowTransResult"

In flowTrans: Parameter Optimization for Flow Cytometry Data Transformation

Description

Class that contains the results of a call to flowTrans on a flowFrame

Objects from the Class

Objects can be created by calls of the form new("flowTransResult", ...). The object contains three slots: the transformed flowFrame, a transform object from which the parameters can be extracted, and a dims slot containing a character vector of the dimensions that have been transformed.

Slots

result:

Object of class "flowFrame". The transformed data.

trans:

Object of class "transform". The transform applied to the flowFrame. Parameters can be extracted via summary(trans).

dims:

Object of class "character". The names of the dimensions that have been transformed.

Methods

summary

signature(object = "flowTransResult"): Summarize the transformed data.

Author(s)

Greg Finak <[e-mail]>, Raphael Gottardo <[e-mail]>.

References

Finak G, Perez JM, Weng A, Gottardo R. Optimizing Data Transformation for Flow Cytometry.

See Also

extractParams summary

Examples

m <- t(matrix(rnorm(10000),2))
colnames(m) <- c("A","B")
m <- flowFrame(m)
res <- flowTrans(m,"mclMultivBoxCox", c("A","B"),
                 n2f=FALSE, parameters.only=FALSE)
summary(res)
extractParams(res)

flowTrans documentation built on Nov. 8, 2020, 8:04 p.m.