extractParams: Extract the transformation parameters from a flowTransResult
In flowTrans: Parameter Optimization for Flow Cytometry Data Transformation

Description Usage Arguments Value Note Author(s) References See Also Examples

View source: R/setMethods.R

Extracts the transformation parameters from a flowTransResult object

1	extractParams(x, dims = NULL)

`x`	An object of type `flowTransResult` returned by a call to `flowTrans`
`dims`	A character vector specifying the dimensions for which to extract transformation parameters.

A list of length length(dims). Each element contains a vector of parameters for transforming the particular dimension.The names of the list elements correspond to the names of the dimensions.

flowTrans estimates common transformation parameters.

Greg Finak <greg.finak@ircm.qc.ca>, Raphael Gottardo <raphael.gottardo@ircm.qc.ca>

Finak G, Perez JM, Weng A, Gottardo R. Optimizing Data Transformation for Flow Cytometry. (Submitted)

summary, flowTrans, flowTransResult

m <- t(matrix(rnorm(10000),2))
colnames(m) <- c("A","B")
m <- flowFrame(m)
res <- flowTrans(m,"mclMultivBoxCox", c("A","B"), n2f=FALSE,
                 parameters.only=FALSE)
summary(res)
extractParams(res)