plotContigOrder: Plot ordering of contigs within a single linkage group.

In contiBAIT: Improves Early Build Genome Assemblies using Strand-Seq Data

Description

Plot ordering of contigs within a single linkage group.

Usage

## S4 method for signature 'ContigOrdering'
plotContigOrder(contigOrder, lg = "all",
  verbose = TRUE)

Arguments

contigOrder	matrix from orderAllContigs with the subdivided linkage groups and the names of the contigs to plot
lg	Integer specifying the linkage group by which to plot. Default is all
verbose	prints messages to the terminal (default is TRUE)

Value

A ggplot object (which will be plotted automatically if not assigned).

Examples

#Get a data.frame of ordered contigs from cells from the same organism, aligned to the same genome
 
data("exampleContigOrder")

plotContigOrder(exampleContigOrder[[1]], lg=1)

contiBAIT documentation built on Nov. 8, 2020, 5:49 p.m.