StrandFreqMatrix: A class for storing a matrix of frequencies of Watson to...
In contiBAIT: Improves Early Build Genome Assemblies using Strand-Seq Data
Description
Usage
Arguments
Value
Examples
Description
The strand information stored in this object is the ratio of Watson to Crick reads
mapping to each contig in each library (cell). This should fall within the range (-1,1).
This class simply extends matrix, but with additional validity checking.
Usage
1
StrandFreqMatrix(counts = matrix(double()))
Arguments
counts
a double matrix of read count ratios
Value
a StrandFreqMatrix
Examples
1
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5
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data("exampleWatsonFreq")
data("exampleCrickFreq")
frequencyMatrix <- sapply(1:ncol(exampleCrickFreq),
function(colNum){exampleCrickFreq[,colNum] / exampleWatsonFreq[,colNum]})
StrandFreqMatrix(frequencyMatrix)
contiBAIT documentation built on Nov. 8, 2020, 5:49 p.m.
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Description Usage Arguments Value Examples
Description
The strand information stored in this object is the ratio of Watson to Crick reads mapping to each contig in each library (cell). This should fall within the range (-1,1). This class simply extends matrix, but with additional validity checking.
Usage
1 | StrandFreqMatrix(counts = matrix(double()))
|
Arguments
counts |
a double matrix of read count ratios |
Value
a StrandFreqMatrix
Examples
1 2 3 4 5 6 | data("exampleWatsonFreq")
data("exampleCrickFreq")
frequencyMatrix <- sapply(1:ncol(exampleCrickFreq),
function(colNum){exampleCrickFreq[,colNum] / exampleWatsonFreq[,colNum]})
StrandFreqMatrix(frequencyMatrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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