calcFractionalCopyNumbers: Calculation of fractional copy numbers for the CNVs and CNV...
In cn.mops: cn.mops - Mixture of Poissons for CNV detection in NGS data
Description
Arguments
Value
Author(s)
Examples
Description
This generic function calculates the fractional copy
numbers of a CNV detection method stored in an instance
of CNVDetectionResult-class. Must be a
result of "referencecn.mops".
Arguments
object
An instance of "CNVDetectionResult"
segStat
Which statistic per segment should be
used. Can be either "mean" or "median".
(Default="mean").
Value
calcFractionalCopyNumbers returns an instance of
"CNVDetectionResult".
Author(s)
Guenter Klambauer klambauer@bioinf.jku.at
Examples
1
2
3
data(cn.mops)
r <- referencecn.mops(X[,1:2],apply(X,1,median))
calcFractionalCopyNumbers(r)
cn.mops documentation built on Nov. 8, 2020, 5:59 p.m.
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Description Arguments Value Author(s) Examples
Description
This generic function calculates the fractional copy
numbers of a CNV detection method stored in an instance
of CNVDetectionResult-class. Must be a
result of "referencecn.mops".
Arguments
object |
An instance of "CNVDetectionResult" |
segStat |
Which statistic per segment should be used. Can be either "mean" or "median". (Default="mean"). |
Value
calcFractionalCopyNumbers returns an instance of
"CNVDetectionResult".
Author(s)
Guenter Klambauer klambauer@bioinf.jku.at
Examples
1 2 3 | data(cn.mops)
r <- referencecn.mops(X[,1:2],apply(X,1,median))
calcFractionalCopyNumbers(r)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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