make_catalogue_strata_df: Group strata from different stratification axes

In YAPSA: Yet Another Package for Signature Analysis

Description

For a comparison of the strata from different orthogonal stratification axes, i.e. othogonal SMCs, the strata have to be grouped and reformatted. This function does this task for the comparison by cosine similarity of mutational catalogues. Output of this function is the basis for applying make_comparison_matrix. It is called by the wrapper function run_comparison_catalogues.

Usage

make_catalogue_strata_df(
  in_stratification_lists_list,
  in_additional_stratum = NULL
)

Arguments

in_stratification_lists_list	List of lists with entries from different (orthogonal) stratification axes or SMCs
in_additional_stratum	Include an additionally supplied stratum in comparison in non-NULL.

Value

A list with entries strata_df, number_of_SMCs, number_of_strata.

• strata_df: Pasted numerical data frame of all strata (these are going to be compared e.g. by make_comparison_matrix).

• number_of_SMCs: Number of orthogonal stratifications in in_stratification_lists_list and additional ones.

• number_of_strata: Cumulative number of strata (sum over the numbers of strata of the different stratifications in in_stratification_lists_list) and additional ones.

See Also

plot_strata

make_comparison_matrix

run_comparison_catalogues

Examples

 NULL

YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.