classify_indels: INDEL function V1 - not compartible with AlexandrovSignatures
In YAPSA: Yet Another Package for Signature Analysis
Description
Usage
Arguments
Value
Examples
Description
INDEL function V1 - not compartible with AlexandrovSignatures
Usage
1
2
3
4
5
6
7
classify_indels(
in_df,
in_ALT.field = "ALT",
in_REF.field = "REF",
in_breaks = c(-Inf, -10, -3, 0, 2, 9, Inf),
in_labels = c("del3", "del2", "del1", "in1", "in2", "in3")
)
Arguments
in_df
Input data frame containing the variances in a vcf-like format
in_ALT.field
Column number for alternitve field
in_REF.field
Coloumn number for reference field
in_breaks
Handed over to function cut
in_labels
Handed over to function cut
Value
classVector, a factor vector of indel sizes
Examples
1
YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
INDEL function V1 - not compartible with AlexandrovSignatures
Usage
1 2 3 4 5 6 7 | classify_indels(
in_df,
in_ALT.field = "ALT",
in_REF.field = "REF",
in_breaks = c(-Inf, -10, -3, 0, 2, 9, Inf),
in_labels = c("del3", "del2", "del1", "in1", "in2", "in3")
)
|
Arguments
in_df |
Input data frame containing the variances in a vcf-like format |
in_ALT.field |
Column number for alternitve field |
in_REF.field |
Coloumn number for reference field |
in_breaks |
Handed over to function cut |
in_labels |
Handed over to function cut |
Value
classVector, a factor vector of indel sizes
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.