enrichSigs: Compare to background distribution
In YAPSA: Yet Another Package for Signature Analysis
Description
Usage
Arguments
Value
Examples
Description
Compare exposures from an analysis of mutational signatures in a cohort of
interest to exposures computed in a background (e.g. the set of WES and WGS
samples from Alexandrov 2013).
Usage
1
enrichSigs(in_cohort_exposures_df, in_background_exposures_df, in_sig_df)
Arguments
in_cohort_exposures_df
Numerical data frame of the exposures of the
cohort of interest.
in_background_exposures_df
Numerical data frame of the exposures of
the background.
in_sig_df
Numerical data frame encoding the mutational signatures.
Value
A data frame with counts and p-values from Fisher tests.
Examples
1
YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Compare exposures from an analysis of mutational signatures in a cohort of interest to exposures computed in a background (e.g. the set of WES and WGS samples from Alexandrov 2013).
Usage
1 | enrichSigs(in_cohort_exposures_df, in_background_exposures_df, in_sig_df)
|
Arguments
in_cohort_exposures_df |
Numerical data frame of the exposures of the cohort of interest. |
in_background_exposures_df |
Numerical data frame of the exposures of the background. |
in_sig_df |
Numerical data frame encoding the mutational signatures. |
Value
A data frame with counts and p-values from Fisher tests.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.