YAPSA
Yet Another Package for Signature Analysis

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lymphomaNature2013_mutCat_df: Example mutational catalog for the SNV vignette

lymphomaNature2013_mutCat_df: Example mutational catalog for the SNV vignette
In YAPSA: Yet Another Package for Signature Analysis

Description Usage Value References Examples

Description

lymphomaNature2013_mutCat_df: A data frame in the format of a SNV mutation catalog. The mutational catalog contains SNV variants from the lymphoma_Nature2013_raw_df data. Mutational catalog was created with create_mutation_catalogue_from_df function.

Usage

1
data(lymphomaNature2013_mutCat_df)

Value

A data fame in the layout of a SNV mutational catalog

References

paste0("ftp://ftp.sanger.ac.uk/pub/cancer/AlexandrovEtAl/", "somatic_mutation_data/Lymphoma B-cell/", "Lymphoma B-cell_clean_somatic_mutations_", "for_signature_analysis.txt")

Examples

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data(lymphomaNature2013_mutCat_df)
head(lymphomaNature2013_mutCat_df)
dim(lymphomaNature2013_mutCat_df)

YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.

Related to lymphomaNature2013_mutCat_df in YAPSA...

YAPSA index
README.md 1. Usage of YAPSA 2. Signature-specific cutoffs 3. Confidence Intervals 4. Stratified Analysis of Mutational Signatures 5. Indel signature analysis 6. Usage of YAPSA for Whole Exome Sequencing (WES) data

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