exonTestability: Check exon testability
In SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Check exon testability, filtering out exons with very few (default: 5) read counts

1	exonTestability(RCS, cutoff = 5)

`RCS`	a ReadCountSet object.
`cutoff`	exons with read counts less than this cutoff are to be marked as untestable.

a ReadCountSet object with slot fData updated.

Xi Wang, xi.wang@newcastle.edu.au

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data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
head(fData(RCS_example))

SeqGSEA documentation built on Nov. 8, 2020, 5:46 p.m.

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