DSresultExonTable: Form a table for DS analysis results at the Exon level
In SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Form a table for differential splicing analysis results at the Exon level.
Usage
1
DSresultExonTable(RCS)
Arguments
RCS
A ReadCountSet object with DSpermutePval done.
Details
A data frame containing each exon's NB-statistics, p-values and adjusted p-values for differential splicing analysis.
Value
A matrix containing exon DS analysis results, including testability, NBstats, p-values and adjusted p-values.
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
See Also
DSresultGeneTable,
DSpermutePval
Examples
1
2
3
4
5
6
7
data(RCS_example, package="SeqGSEA")
permuteMat <- genpermuteMat(RCS_example, times=10)
RCS_example <- exonTestability(RCS_example)
RCS_example <- estiExonNBstat(RCS_example)
RCS_example <- estiGeneNBstat(RCS_example)
RCS_example <- DSpermutePval(RCS_example, permuteMat)
head(DSresultExonTable(RCS_example))
SeqGSEA documentation built on Nov. 8, 2020, 5:46 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Form a table for differential splicing analysis results at the Exon level.
Usage
1 | DSresultExonTable(RCS)
|
Arguments
RCS |
A ReadCountSet object with |
Details
A data frame containing each exon's NB-statistics, p-values and adjusted p-values for differential splicing analysis.
Value
A matrix containing exon DS analysis results, including testability, NBstats, p-values and adjusted p-values.
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
See Also
DSresultGeneTable,
DSpermutePval
Examples
1 2 3 4 5 6 7 | data(RCS_example, package="SeqGSEA")
permuteMat <- genpermuteMat(RCS_example, times=10)
RCS_example <- exonTestability(RCS_example)
RCS_example <- estiExonNBstat(RCS_example)
RCS_example <- estiGeneNBstat(RCS_example)
RCS_example <- DSpermutePval(RCS_example, permuteMat)
head(DSresultExonTable(RCS_example))
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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