estiGeneNBstat: Calculate NB-statistics quantifying differential splicing for...
In SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Description
Usage
Arguments
Value
Note
Author(s)
References
See Also
Examples
Description
Calculate NB-statistics quantifying differential splicing for each gene between two groups of samples compared. The results will be used for GSEA run (as DS-scores).
Usage
1
estiGeneNBstat(RCS)
Arguments
RCS
a ReadCountSet object after running estiExonNBstat.
Value
A ReadCountSet object with slot featureData_gene updated.
Note
Please run estiExonNBstat before run this function.
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
References
Weichen Wang, Zhiyi Qin, Zhixing Feng, Xi Wang and Xuegong Zhang (2013). Identifying differentially spliced genes from two groups of RNA-seq samples. Gene, 518(1):164-170.
See Also
Examples
1
2
3
4
5
data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
RCS_example <- estiExonNBstat(RCS_example)
RCS_example <- estiGeneNBstat(RCS_example)
head(RCS_example@featureData_gene)
SeqGSEA documentation built on Nov. 8, 2020, 5:46 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Note Author(s) References See Also Examples
Description
Calculate NB-statistics quantifying differential splicing for each gene between two groups of samples compared. The results will be used for GSEA run (as DS-scores).
Usage
1 | estiGeneNBstat(RCS)
|
Arguments
RCS |
a ReadCountSet object after running |
Value
A ReadCountSet object with slot featureData_gene updated.
Note
Please run estiExonNBstat before run this function.
Author(s)
Xi Wang, xi.wang@newcastle.edu.au
References
Weichen Wang, Zhiyi Qin, Zhixing Feng, Xi Wang and Xuegong Zhang (2013). Identifying differentially spliced genes from two groups of RNA-seq samples. Gene, 518(1):164-170.
See Also
Examples
1 2 3 4 5 | data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
RCS_example <- estiExonNBstat(RCS_example)
RCS_example <- estiGeneNBstat(RCS_example)
head(RCS_example@featureData_gene)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.