Files in SeqGSEA

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

R/Allclasses.R R/SeqGSEA.R R/DSscore.R R/estiNB.R R/plots.R R/DEscore.R man/DEscore.Rd man/DENBTest.Rd man/DSpermutePval.Rd man/exonID.Rd man/writeSigGeneSet.Rd man/counts-methods.Rd man/normES.Rd man/geneList.Rd man/DSresultExonTable.Rd man/runSeqGSEA.Rd man/DENBStatPermut4GSEA.Rd man/geneTestability.Rd man/RCS_example.Rd man/runDESeq.Rd man/scoreNormalization.Rd man/estiGeneNBstat.Rd man/newGeneSets.Rd man/topGeneSets.Rd man/calES.Rd man/plotSigGeneSet.Rd man/writeScores.Rd man/DSpermute4GSEA.Rd man/label.Rd man/getGeneCount.Rd man/size.Rd man/plotSig.Rd man/signifES.Rd man/DEpermutePval.Rd man/convertSymbol2Ensembl.Rd man/normFactor.Rd man/geneScore.Rd man/estiExonNBstat.Rd man/ReadCountSet-class.Rd man/DSresultGeneTable.Rd man/plotES.Rd man/SeqGeneSet-class.Rd man/topDSExons.Rd man/rankCombine.Rd man/topDEGenes.Rd man/convertEnsembl2Symbol.Rd man/genpermuteMat.Rd man/topDSGenes.Rd man/geneSetNames.Rd man/GS_example.Rd man/GSEnrichAnalyze.Rd man/newReadCountSet.Rd man/geneSetDescs.Rd man/plotGeneScore.Rd man/DENBStat4GSEA.Rd man/geneID.Rd man/GSEAresultTable.Rd man/subsetByGenes.Rd man/SeqGSEA-package.Rd man/loadGenesets.Rd man/loadExonCountData.Rd man/geneSetSize.Rd man/exonTestability.Rd man/calES.perm.Rd man/genePermuteScore.Rd inst/doc/SeqGSEA.R inst/doc/SeqGSEA.pdf