STATegRa_data_TCGA_BRCA: STATegRa data

In STATegRa: Classes and methods for multi-omics data integration

Description

Data were downloaded from TCGA data portal, https://tcga-data.nci.nih.gov/tcga/. We downloaded sixteen tumour samples and the sixteen matching normal, for Breast invasive carcinoma, BRCA, batch 93. Herein, three types of data modalities are included, RNAseq (TCGA_BRCA_Data$RNAseq), RNAseqV2 (TCGA_BRCA_Data$RNAseqV2) and Expression-Genes (TCGA_BRCA_Data$Microarray). The Data Level was set to Level 3. For each data type, we pooled all data to one matrix, where rows corresponded to genes and columns to samples. Only the first 100 genes are included.

Format

One list, which contains three ExpressionSet objects.

Author(s)

Nestoras Karathanasis, Vincenzo Lagani

Source

See https://tcga-data.nci.nih.gov/tcga/.

Examples

# load data
data(TCGA_BRCA_Batch_93)

STATegRa documentation built on Nov. 8, 2020, 5:26 p.m.