mergeTxFeatures: Merge redundant features
In SGSeq: Splice event prediction and quantification from RNA-seq data

Merge features, typically after feature prediction in multiple samples.

1	mergeTxFeatures(..., min_n_sample = 1)

`...`	one or more `TxFeatures` objects, or a single list of `TxFeatures` objects
`min_n_sample`	Minimum number of samples a feature must be observed in to be included

Merged features are the union of splice junctions and internal exons. For terminal exons with shared spliced boundary, the longest exon is retained.

TxFeatures object with merged features

Leonard Goldstein

1	txf_merged <- mergeTxFeatures(txf_ann, txf_pred)

SGSeq documentation built on Nov. 8, 2020, 8:31 p.m.

SGSeq index

Splice event prediction and quantification from RNA-seq data

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