SGVariantCounts: Splice graph variant counts
In SGSeq: Splice event prediction and quantification from RNA-seq data

Creates an instance of S4 class SGVariantCounts for storing splice variant counts.

1	SGVariantCounts(x)

`x`	`RangedSummarizedExperiment` with `SGVariants` as `rowRanges` and assays “variantFreq”, “countsVariant5p”, “countsVariant3p”, “countsEvent5p”, “countsEvent3p”, and optionally “countsVariant5pOr3p”

SGVariantCounts object

Leonard Goldstein

1	sgvc <- SGVariantCounts()

SGSeq documentation built on Nov. 8, 2020, 8:31 p.m.

SGSeq index

Splice event prediction and quantification from RNA-seq data

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