makeSGFeatureCounts: Create 'SGFeatureCounts' object
In SGSeq: Splice event prediction and quantification from RNA-seq data

Create SGFeatureCounts object from rowRanges, colData and counts.

1	makeSGFeatureCounts(rowRanges, colData, counts, min_anchor = 1)

`rowRanges`	`SGFeatures` object
`colData`	Data frame with sample information
`counts`	Integer matrix of counts
`min_anchor`	Integer specifiying minimum anchor length

SGFeatureCounts object

Leonard Goldstein

1 2	sgfc <- makeSGFeatureCounts(sgf_pred, si, matrix(0L, length(sgf_pred), nrow(si)))

SGSeq documentation built on Nov. 8, 2020, 8:31 p.m.

SGSeq index

Splice event prediction and quantification from RNA-seq data

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