extractProtSOCN: Sequence-Order-Coupling Numbers
In Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Sequence-Order-Coupling Numbers
Usage
1
extractProtSOCN(x, nlag = 30)
Arguments
x
A character vector, as the input protein sequence.
nlag
The maximum lag, defualt is 30.
Details
This function calculates the Sequence-Order-Coupling Numbers
(Dim: nlag * 2, default is 60).
Value
A length nlag * 2 named vector
Author(s)
Nan Xiao <https://nanx.me>
References
Kuo-Chen Chou. Prediction of Protein Subcellar Locations by
Incorporating Quasi-Sequence-Order Effect.
Biochemical and Biophysical Research Communications,
2000, 278, 477-483.
Kuo-Chen Chou and Yu-Dong Cai. Prediction of Protein Sucellular Locations by
GO-FunD-PseAA Predictor.
Biochemical and Biophysical Research Communications,
2004, 320, 1236-1239.
Gisbert Schneider and Paul Wrede. The Rational Design of
Amino Acid Sequences by Artifical Neural Networks and Simulated
Molecular Evolution: Do Novo Design of an Idealized Leader Cleavge Site.
Biophys Journal, 1994, 66, 335-344.
See Also
See extractProtQSO for
quasi-sequence-order descriptors.
Examples
1
2
x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtSOCN(x)
Rcpi documentation built on Nov. 8, 2020, 8:23 p.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Sequence-Order-Coupling Numbers
Usage
1 | extractProtSOCN(x, nlag = 30)
|
Arguments
x |
A character vector, as the input protein sequence. |
nlag |
The maximum lag, defualt is 30. |
Details
This function calculates the Sequence-Order-Coupling Numbers
(Dim: nlag * 2, default is 60).
Value
A length nlag * 2 named vector
Author(s)
Nan Xiao <https://nanx.me>
References
Kuo-Chen Chou. Prediction of Protein Subcellar Locations by Incorporating Quasi-Sequence-Order Effect. Biochemical and Biophysical Research Communications, 2000, 278, 477-483.
Kuo-Chen Chou and Yu-Dong Cai. Prediction of Protein Sucellular Locations by GO-FunD-PseAA Predictor. Biochemical and Biophysical Research Communications, 2004, 320, 1236-1239.
Gisbert Schneider and Paul Wrede. The Rational Design of Amino Acid Sequences by Artifical Neural Networks and Simulated Molecular Evolution: Do Novo Design of an Idealized Leader Cleavge Site. Biophys Journal, 1994, 66, 335-344.
See Also
See extractProtQSO for
quasi-sequence-order descriptors.
Examples
1 2 | x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtSOCN(x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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