extractProtCTDT: CTD Descriptors - Transition

In Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery

Description

CTD Descriptors - Transition

Usage

extractProtCTDT(x)

Arguments

x	A character vector, as the input protein sequence.

Details

This function calculates the Transition descriptor of the CTD descriptors (Dim: 21).

Value

A length 21 named vector

Author(s)

Nan Xiao <https://nanx.me>

References

Inna Dubchak, Ilya Muchink, Stephen R. Holbrook and Sung-Hou Kim. Prediction of protein folding class using global description of amino acid sequence. Proceedings of the National Academy of Sciences. USA, 1995, 92, 8700-8704.

Inna Dubchak, Ilya Muchink, Christopher Mayor, Igor Dralyuk and Sung-Hou Kim. Recognition of a Protein Fold in the Context of the SCOP classification. Proteins: Structure, Function and Genetics, 1999, 35, 401-407.

See Also

See extractProtCTDC and extractProtCTDD for the Composition and Distribution descriptors.

Examples

x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtCTDT(x)

Rcpi documentation built on Nov. 8, 2020, 8:23 p.m.