avs.get: Get information from individual slots in an AVS object.

In RTN: RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons

Description

Get information from individual slots in an AVS object.

Usage

avs.get(object, what="summary", report=FALSE, pValueCutoff=NULL)

Arguments

object	an object of class 'AVS' AVS-class.
what	a single character value specifying which information should be retrieved from the slots. Options: 'markers', 'validatedMarkers', 'variantSet', 'randomSet', 'linkedMarkers', 'randomMarkers', 'vse', 'evse', 'pevse', 'annotation.vse', 'annotation.evse', 'annotation.pevse', 'summary' and 'status'.
report	a single logical value indicating whether to return results from 'vse', 'evse' as a consolidated table (if TRUE), or as they are (if FALSE).
pValueCutoff	an optional single numeric value specifying the cutoff to retrive results for p-values considered significant.

Value

get the slot content from an object of class 'AVS' AVS-class.

Author(s)

Mauro Castro

Examples

## Not run: 
#This example requires the RTNdata package! (currently available under request)
library(RTNdata.LDHapMapRel27)
data(bcarisk, package="RTNdata.LDHapMapRel27")
bcavs <- avs.preprocess.LDHapMapRel27(bcarisk, nrand=1000)
avs.get(avs)

## End(Not run)

RTN documentation built on Nov. 12, 2020, 2:02 a.m.