Files in RTN
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons
NAMESPACE
.Rinstignore
DESCRIPTION
tests/runTests.R
R/TNA-methods.R
R/AllSupplementsTNA.R
R/AllClasses.R
R/TNI-annotation.R
R/AllPlotsAVS.R
R/AllGenerics.R
R/AllPlotsTNI.R
R/TNI-subgroups.R
R/AVS-methods.R
R/TNI-methods.R
R/TNI-pruning.R
R/ClassUnions.R
R/AllChecks.R
R/AllPlotsTNA.R
R/AllSupplementsAVS.R
R/AllSupplementsTNI.R
man/tna.plot.gsea1.Rd
man/tna.get.Rd
man/avs.pevse.Rd
man/tni.bootstrap.Rd
man/TNI-class.Rd
man/TNA-class.Rd
man/avs.get.Rd
man/tni.replace.samples.Rd
man/tni.alpha.adjust.Rd
man/tni.constructor.Rd
man/TNI.data.Rd
man/RTN.data.Rd
man/avs.plot2.Rd
man/tni.conditional.Rd
man/tni2tna.preprocess.Rd
man/avs.vse.Rd
man/tna.plot.gsea2.Rd
man/tni.permutation.Rd
man/tni.overlap.genesets.Rd
man/avs.evse.Rd
man/tna.gsea2.Rd
man/AVS-class.Rd
man/avs.plot1.Rd
man/tni.regulon.summary.Rd
man/tna.mra.Rd
man/tni.preprocess.Rd
man/tni.plot.sre.Rd
man/tna.gsea1.Rd
man/tni.sre.Rd
man/tni.annotate.regulons.Rd
man/RTN-package.Rd
man/tni.prune.Rd
man/tni.annotate.samples.Rd
man/tni.area3.Rd
man/tni.dpi.filter.Rd
man/tni.graph.Rd
man/tni.gsea2.Rd
man/tni.get.Rd
man/upgradeTNI.Rd
man/upgradeTNA.Rd
man/tni.plot.checks.Rd
inst/CITATION
inst/NEWS.Rd
inst/unitTests/test_rtn.R
inst/doc/RTN.R
inst/doc/RTN.html
inst/doc/RTN.Rmd
data/tfsData.RData
data/tnaData.RData
data/datalist
data/pksData.RData
data/stni.RData
data/tniData.RData
build/vignette.rds
vignettes/custom.css
vignettes/fig5.png
vignettes/fig1.png
vignettes/fig2.png
vignettes/fig3.png
vignettes/bibliography.bib
vignettes/RTN.Rmd
vignettes/fig4.png
