plotGridEffect: PLOT GRID EFFECT OF RTCA

In RTCA: Open-source toolkit to analyse data from xCELLigence System (RTCA)

Description

Plot the mean and deviation of rows/columns of a RTCA E-plate, to provide hints of potential row/column effect of the plate

Usage

plotGridEffect(rtca, mode = c("column", "row"), xlab = "time point",
ylab = "readout", legend = TRUE, col, ...)

Arguments

rtca	An object of RTCA
mode	character, either “column” or “row”, to choose which effect to depict
xlab	x-axis label
ylab	y-axis label
legend	logical, whether the legend should be added
col	Color of the curves
...	Further parameters passed to plot function

Details

The error bars depicts the standard deviations

Value

NULL, the funciton is called for its side effect

Author(s)

Jitao David Zhang

Examples

require(RTCA)
  
ofile <- system.file("extdata/testOutput.csv", package="RTCA")
x <- parseRTCA(ofile)
plotGridEffect(x)

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

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    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: gtools
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RTCA documentation built on Nov. 8, 2020, 7:52 p.m.