Files in RNAmodR

Detection of post-transcriptional modifications in high throughput sequencing data

README.md tests/testthat.R tests/testthat/test-8visualization.R tests/testthat/test-9show.R tests/testthat/test-0SequenceDataFrame.R tests/testthat/test-3zcomparison.R tests/testthat/test-3subset.R tests/testthat/test-0SequenceData.R tests/testthat/test-3normalization.R tests/testthat/test-0settings.R tests/testthat/test-1SequenceDataSet.R tests/testthat/test-2Modifier.R tests/testthat/test-4roc.R R/SequenceData-viz.R R/settings.R R/Modifier-Inosine-class.R R/SequenceData-class.R R/utils.R R/SequenceData-normalized-end-pos.R R/SequenceData-protected-end-pos.R R/Gviz-ModifiedSequenceTrack-class.R R/Modifier-utils.R R/normalization.R R/SequenceDataList-viz.R R/Modifier-Inosine-viz.R R/ModifierSet-class.R R/SequenceDataList-class.R R/SequenceDataSet-class.R R/Modifier-class.R R/Modifier-viz.R R/AllGenerics.R R/SequenceData-stats.R R/SequenceDataSet-viz.R R/SequenceData-pileup.R R/ModifierSet-comparison.R R/Modifier-subset.R R/RNAmodR-external-functions.R R/Modifier-roc.R R/utils-bam.R R/ModifierSet-viz.R R/SequenceData-coverage.R R/RNAmodR-summary.R R/SequenceDataFrame-class.R R/SequenceData-end-pos.R R/SequenceData-subset.R R/RNAmodR.R man/SequenceDataSet-class.Rd man/settings.Rd man/CoverageSequenceData-class.Rd man/RNAmodR-datasets.Rd man/ModInosine.Rd man/aggregate.Rd man/RNAmodR.Rd man/PileupSequenceData-class.Rd man/SequenceModRNAStringSetTrack-class.Rd man/RNAmodR-development.Rd man/SequenceDataFrame-class.Rd man/ProtectedEndSequenceData-class.Rd man/ModifierSet-class.Rd man/compareByCoord.Rd man/EndSequenceData-class.Rd man/stats.Rd man/ModInosine-internals.Rd man/subsetByCoord.Rd man/plotROC.Rd man/SequenceModDNAStringSetTrack-class.Rd man/SequenceDataList-class.Rd man/Modifier-functions.Rd man/Modifier-class.Rd man/SequenceData-functions.Rd man/SequenceData-class.Rd man/plotData.Rd man/modify.Rd man/NormEndSequenceData-class.Rd man/ModInosine-functions.Rd man/RNAmodR-internals.Rd inst/doc/RNAmodR.creation.R inst/doc/RNAmodR.creation.Rmd inst/doc/RNAmodR.Rmd inst/doc/RNAmodR.R vignettes/RNAmodR.creation.Rmd vignettes/RNAmodR.Rmd