plot-pics: Plot methods for PICS objects

In PICS: Probabilistic inference of ChIP-seq

Description

Methods to plot pics and segReads objects and derived classes.

Usage

## S4 method for signature 'pics,segReads'
plot(
  x,
  y,
  addKernel = FALSE,
  addNucleosome = FALSE,
  addSe = TRUE,
  main = NULL,
  ...
)

## S4 method for signature 'picsError,segReads'
plot(x, y, addKernel = FALSE, main = NULL, ...)

## S4 method for signature 'picsList,segReadsList'
plot(
  x,
  y,
  regionIndex = NULL,
  addKernel = FALSE,
  addNucleosome = FALSE,
  addSe = TRUE,
  main = NULL,
  ...
)

Arguments

x, y	Objects
addKernel	Add kernel density estimate to the plot.
addNucleosome	Add a nucleosome track to the plot.
addSe	Add standard error to the plot.
main	Main title.
...	Arguments to be passed to the plot method.
regionIndex	Add region index to the plot.

Functions

• plot,pics,segReads-method: Plot method for pics and segReads

• plot,picsError,segReads-method: Plot method for picsError and segReads

• plot,picsList,segReadsList-method: Plot method for picsList and segReadsList

PICS documentation built on Nov. 8, 2020, 8:21 p.m.