picsError-class: picsError class

In PICS: Probabilistic inference of ChIP-seq

Description

This class is used in cases when the algorithm does not converge.

Usage

## S4 method for signature 'picsError'
show(object)

## S4 method for signature 'picsError'
minRange(x)

## S4 method for signature 'picsError'
maxRange(x)

## S4 method for signature 'picsError'
score(x)

## S4 method for signature 'picsError'
scoreReverse(x)

## S4 method for signature 'picsError'
scoreForward(x)

## S4 method for signature 'picsError'
chromosome(x)

## S4 method for signature 'picsError'
se(x)

## S4 method for signature 'picsError'
seF(x)

## S4 method for signature 'picsError'
seR(x)

## S4 method for signature 'picsError'
sigmaSqF(x)

## S4 method for signature 'picsError'
sigmaSqR(x)

## S4 method for signature 'picsError'
delta(x)

## S4 method for signature 'picsError'
mu(x)

## S4 method for signature 'picsError'
w(x)

## S4 method for signature 'picsError'
K(x)

## S4 method for signature 'picsError'
code(x)

Arguments

object, x

A picsError object.

Functions

• show,picsError-method: show method

• minRange,picsError-method: Get start of range

• maxRange,picsError-method: Get end of range

• score,picsError-method: Score accessor.

• scoreReverse,picsError-method: Reverse score accessor.

• scoreForward,picsError-method: Forward score accessor.

• chromosome,picsError-method: Chromosome accessor

• se,picsError-method: se accessor

• seF,picsError-method: Forward se accessor

• seR,picsError-method: Reverse se accessor

• sigmaSqF,picsError-method: sigmaSqF accessor

• sigmaSqR,picsError-method: sigmaSqR accessor

• delta,picsError-method: delta accessor

• mu,picsError-method: mu accessor

• w,picsError-method: w accessor

• K,picsError-method: K accessor

• code,picsError-method: Error code accessor

Slots

errorCode

The error code for debugging.

PICS documentation built on Nov. 8, 2020, 8:21 p.m.