results: Extract results for pairadise analysis

In PAIRADISE: PAIRADISE: Paired analysis of differential isoform expression

Description

Extract results for pairadise analysis

Usage

results(pdat, p.adj = "BH", sig.level = 0.01, details = FALSE)

Arguments

pdat	A PDseDataSet object from pairadise analysis
p.adj	The p ajustment method.
sig.level	The cutoff of significant results
details	Whether to list detailed results.

Value

The function return a results DataFrame.

testStats	Vector of test statistics for paired analysis.
p.value	Vector of pvalues for each exon/event.
p.adj	The adjusted p values

If details is TRUE, more detailed parameter estimates for constrained and unconstrained model will return.

Examples

data("sample_dataset")
pdat <- PDseDataSetFromMat(sample_dataset)
pdat <- pairadise(pdat)
results(pdat)

PAIRADISE documentation built on Nov. 8, 2020, 8:22 p.m.