loglikelihood: loglikelihood

In PAIRADISE: PAIRADISE: Paired analysis of differential isoform expression

Description

Used internally in PAIRADISE to compute the log-likelihood function

Usage

loglikelihood(
  M,
  I1,
  S1,
  I2,
  S2,
  l.iI,
  l.iS,
  logit.psi1,
  logit.psi2,
  alpha,
  s1,
  s2,
  s,
  mu,
  delta
)

Arguments

M	Number of replicates for the current exon. Positive integer.
I1	Exon inclusion counts for group 1. Positive integers.
S1	Exon skipping counts for group 1. Positive integers.
I2	Exon inclusion counts for group 2. Positive integers.
S2	Exon skipping counts for group 2. Positive integers.
l.iI	Effective length of inclusion isoform. Positive integer.
l.iS	Effective length of skipping isoform. Positive integer.
logit.psi1	Numeric vector with values of logit psi1.
logit.psi2	Numeric vector with values of logit psi2.
alpha	Numeric vector with values of alpha.
s1	Group 1 standard deviation. Positive number.
s2	Group 2 standard deviation. Positive number.
s	Overall standard deviation. Positive number.
mu	Parameter mu.
delta	Parameter delta.

Value

log likelihood value at input.

PAIRADISE documentation built on Nov. 8, 2020, 8:22 p.m.