fetch: Fetch

In MouseFM: In-silico methods for genetic finemapping in inbred mice

Description

Fetch homozygous genotypes for a specified chromosomal region in 37 inbred mouse strains.

Usage

fetch(
  chr,
  start = NULL,
  end = NULL,
  consequence = NULL,
  impact = NULL,
  return_obj = "dataframe"
)

Arguments

chr	Vector of chromosome names.
start	Optional vector of chromosomal start positions of target regions (GRCm38).
end	Optional vector of chromosomal end positions of target regions (GRCm38).
consequence	Optional vector of consequence types.
impact	Optional vector of impact types.
return_obj	The user can choose to get the result to be returned as data frame ("dataframe") or as a GenomicRanges::GRanges ("granges") object. Default value is "dataframe".

Value

Data frame or GenomicRanges::GRanges object containing result data.

Examples

geno = fetch("chr7", start = 5000000, end = 6000000)

comment(geno)

MouseFM documentation built on Nov. 8, 2020, 7:26 p.m.