annotate_mouse_genes: Annotate with genes

In MouseFM: In-silico methods for genetic finemapping in inbred mice

Description

Request mouse genes from Ensembl Biomart.

Usage

annotate_mouse_genes(geno, flanking = NULL)

Arguments

geno	Data frame or GenomicRanges::GRanges object including columns chr, pos.
flanking	Size of flanking sequence to be included.

Value

Data frame.

Examples

geno = finemap("chr1",
  start = 5000000, end = 6000000,
  strain1 = c("C57BL_6J"), strain2 = c("AKR_J", "A_J", "BALB_cJ")
)

genes = annotate_mouse_genes(geno, 50000)

MouseFM documentation built on Nov. 8, 2020, 7:26 p.m.