tool.fdr: Estimate False Discovery Rates (FDR)

In Mergeomics: Integrative network analysis of omics data

Description

tool.fdr estimates FDRs for modules as another module statistic.

Usage

tool.fdr(p, f = NULL)

Arguments

p	p-values of modules
f	pre-defined threshold for FDR

Details

FDRs of modules can be obtained by using either empirical method or Benjamini and Hochberg method.

Value

res	data list including the estimated false discovery rates of modules

Author(s)

Ville-Petteri Makinen

See Also

tool.fdr.empirical, tool.fdr.bh

Examples

## let us assume we have a set of pvalues
## and would like to find FDR values:
set.seed(1)
p <- abs(rnorm(10))*1e-2
FDRs <- tool.fdr(p) ## default method is Benjamini Hochberg

Mergeomics documentation built on Nov. 8, 2020, 6:58 p.m.