runDMRcate: Run DMRcate
In MEAL: Perform methylation analysis
Description
Usage
Arguments
Details
Value
See Also
Description
Run DMRcate
Usage
1
runDMRcate(set, model, coefficient = 2, resultSet = FALSE, ...)
Arguments
set
GenomicRatioSet, eSet derived object or
SummarizedExperiment
model
Model matrix or formula to get model matrix from set.
coefficient
Numeric with the column of model matrix used in the analysis.
(Default: 2)
resultSet
Should results be encapsulated in a resultSet? (Default: TRUE)
...
Further arguments passed to cpg.annotate or dmrcate.
Details
This function has been deprecated and will be defunct in the new version.
Value
data.frame or resultSet with the result of bumphunter
See Also
MEAL documentation built on Feb. 3, 2021, 2 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value See Also
Description
Run DMRcate
Usage
1 | runDMRcate(set, model, coefficient = 2, resultSet = FALSE, ...)
|
Arguments
set |
|
model |
Model matrix or formula to get model matrix from |
coefficient |
Numeric with the column of model matrix used in the analysis. (Default: 2) |
resultSet |
Should results be encapsulated in a |
... |
Further arguments passed to |
Details
This function has been deprecated and will be defunct in the new version.
Value
data.frame or resultSet with the result of bumphunter
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.