runBlockFinder: Run blockFinder

In MEAL: Perform methylation analysis

Description

Run blockFinder

Usage

runBlockFinder(
  set,
  model,
  coefficient = 2,
  blockfinder_cutoff = 0.1,
  num_permutations = 0,
  resultSet = FALSE,
  verbose = FALSE,
  ...
)

Arguments

set	GenomicRatioSet, eSet derived object or SummarizedExperiment
model	Model matrix or formula to get model matrix from set.
coefficient	Numeric with the column of model matrix used in the analysis. (Default: 2)
blockfinder_cutoff	Numeric with the minimum cutoff to include a probe in a block. (Default: 0.1)
num_permutations	Numeric with the number of permutations run to compute the blocks p-value. (Default: 0)
resultSet	Should results be encapsulated in a resultSet? (Default: TRUE)
verbose	Logical value. Should the function be verbose? (Default: FALSE)
...	Further arguments passed to blockFinder.

Details

This function has been deprecated and will be defunct in the new version.

Value

data.frame or resultSet with the result of blockFinder

See Also

blockFinder

MEAL documentation built on Feb. 3, 2021, 2 a.m.