getGeneVals: Get all probes related to a gene

In MEAL: Perform methylation analysis

Description

Given a ResultSet and a gene name returns the results of the analysis of all the probes of the gene.

Usage

getGeneVals(
  object,
  gene,
  rid = 1,
  genecol = "genes",
  fNames = c("chromosome", "start"),
  ...
)

Arguments

object	ResultSet
gene	Character with the name of the gene
rid	Name of the results: "DiffMean" for mean differences, "DiffVar" for variance differences. (Default: DiffMean)
genecol	Character with the column of object fData with the gene information
fNames	Names of the columns of object fData that will be added to the results data.frame.
...	Further arguments passed to getProbeResults

Value

data.frame with the results of the analysis of the probes belonging to the gene

Examples

## Not run: 
if (require(minfiData)){
 set <- ratioConvert(mapToGenome(MsetEx[1:10,]))
methyOneVar <- runPipeline(set, variable_names = "sex")
getGeneVals(methyOneVar, "TSPY4")
}

## End(Not run)

MEAL documentation built on Feb. 3, 2021, 2 a.m.