Man pages for MEAL
Perform methylation analysis
| computeRDAR2 | Compute signification of RDA test |
| correlationMethExprs | Computes the correlation between methylation and expression |
| exportResults | Exports results data.frames to csv files. |
| filterResults | Filter the data.frame obtained from probe analysis |
| getGeneVals | Get all probes related to a gene |
| getProbeResults | Obtain probe results from a 'ResultSet' |
| getRDAresults | Get a summary of RDA results |
| MEAL | MEAL (Methylation and Expression AnaLizer): Package for... |
| MEAL-defunct | Defunct functions |
| plotFeature | Plot values of a feature |
| plotRDA | Plot RDA results |
| plotRegion | Plot results in a genomic region |
| runBlockFinder | Run blockFinder |
| runBumphunter | Run bumphunter |
| runDiffMeanAnalysis | Run differential mean analysis |
| runDiffVarAnalysis | Run differential variance analysis |
| runDMRcate | Run DMRcate |
| runPipeline | Perform differential methylation analysis |
| runRDA | Calculate RDA for a set |
| runRegionAnalysis | Run different DMR detection methods |
| topRDAhits | Get the top features associated with the RDA |
