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tests/testthat/test_fastq.R
In IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data
## The first read here is missing a quality value, so is invalid
testString <- c("read1\nAAAAAA\n+\n!!!!!", "read2\nCCCCCC\n+\n!!!!!!", NULL)
fastqResult <- .processFastqVec(testString)
expect_equal(length(fastqResult$invalid), 1)
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IONiseR documentation built on Nov. 8, 2020, 6 p.m.
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## The first read here is missing a quality value, so is invalid
testString <- c("read1\nAAAAAA\n+\n!!!!!", "read2\nCCCCCC\n+\n!!!!!!", NULL)
fastqResult <- .processFastqVec(testString)
expect_equal(length(fastqResult$invalid), 1)
Try the IONiseR package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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