readFast5Summary: Read summary data from fast5 files.

In IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data

Description

Reads one or more fast5 files and collects summary information about them.

Usage

readFast5Summary(files)

Arguments

files

Character vector of fast5 files to be read.

Details

Currently this function assumes all files passed to it come from the same sequencing run. It makes no effort to check for alternative file names or the like. If files from multiple runs are passed to it they will be collated together and any analysis performed on them will represent the mixture of both experiments.

Value

Object of class Fast5Summary

Examples

## Not run: 
fast5files <- list.files('/foo/bar/', pattern = '.fast5$')
summaryData <- readFast5Summary(fast5files)

## End(Not run)

IONiseR documentation built on Nov. 8, 2020, 6 p.m.