readFast5Log: Read the log entry from a single fast5 file
In IONiseR: Quality Assessment Tools for Oxford Nanopore MinION data
Description
Usage
Arguments
Value
Examples
Description
Basecalling procedures performed on fast5 files generally leave a
log file entry recording how far through the pipeline the file
proceeded. This function will extract this information as a
single string. It can be printed in a more readable format
using the cat function.
Usage
1
Arguments
file
Character vector of fast5 file to be read.
Value
Character vector containing the log information.
NULL if no log is found.
Examples
1
2
3
fast5file <- system.file('extdata', 'example.fast5', package = "IONiseR")
log <- readFast5Log(fast5file)
cat(log)
IONiseR documentation built on Nov. 8, 2020, 6 p.m.
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Description Usage Arguments Value Examples
Description
Basecalling procedures performed on fast5 files generally leave a
log file entry recording how far through the pipeline the file
proceeded. This function will extract this information as a
single string. It can be printed in a more readable format
using the cat function.
Usage
1 |
Arguments
file |
Character vector of fast5 file to be read. |
Value
Character vector containing the log information.
NULL if no log is found.
Examples
1 2 3 | fast5file <- system.file('extdata', 'example.fast5', package = "IONiseR")
log <- readFast5Log(fast5file)
cat(log)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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