Files in ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

NAMESPACE

DESCRIPTION

build/vignette.rds

R/TFsurvival.plot.R R/Schematic.plot.R R/methodAccess.R R/TCGA_pipe.R R/FetchTCGA.R R/StatisticTest.R R/plots.R R/Small.R R/motif.TF.Plots.R R/ELMER.R R/Main_function.R R/Scatter.plot.R R/GetNearbyGenes.R vignettes/plots_motif_enrichment.Rmd vignettes/analysis_gui.Rmd

vignettes/bibliography.bib

vignettes/plots_heatmap.Rmd vignettes/index.Rmd vignettes/analysis_regulatory_tf.Rmd vignettes/usecase.Rmd vignettes/pipe.Rmd vignettes/input.Rmd

vignettes/_site.yml

vignettes/plots_scatter.Rmd

vignettes/hexELMER.png

vignettes/analysis_get_pair.Rmd vignettes/plots_schematic.Rmd vignettes/analysis_diff_meth.Rmd vignettes/analysis_motif_enrichment.Rmd vignettes/analysis_data_input.Rmd vignettes/plots_TF.Rmd

vignettes/style.css

vignettes/figures/elmer_data_exp_select.png

vignettes/figures/elmer_visualize_table_tf.jpg

vignettes/figures/gui_exp_prepare_completed.png

vignettes/figures/elmer_analysis_diffmeth.png

vignettes/figures/gui_exp_prepare.png

vignettes/figures/gui_dnamet_prepare_completed.png

vignettes/figures/elmer_data_final.jpg

vignettes/figures/workflow.png

vignettes/figures/elmer_data_dnamet.png

vignettes/figures/paper_get_pairs.jpg

vignettes/figures/gui_menu.png

vignettes/figures/elemer_visualize_schematic_gene.jpg

vignettes/figures/elmer_visualize_results.png

vignettes/figures/elmer_analysis_pair.png

vignettes/figures/elmer_visualize_plot_scatter_byTF.jpg

vignettes/figures/paper_get.pairs.jpg

vignettes/figures/elmer_analysis_groups.png

vignettes/figures/elmer_data_menu.png

vignettes/figures/gui_exp_query_results.jpg

vignettes/figures/gui_dnamet_prepare.png

vignettes/figures/elmer_visualize_table_sigprobes.jpg

vignettes/figures/elmer_data_dnamet_select.png

vignettes/figures/elemer_visualize_schematic_probe.jpg

vignettes/figures/paper_diff_meth.jpg

vignettes/figures/elmer_analysis_TF.png

vignettes/figures/elmer_visualize_select2.png

vignettes/figures/gui_visualize_se.png

vignettes/figures/elmer_visualize_tfraningplot.jpg

vignettes/figures/elmer_analysis_data.png

vignettes/figures/elemer_visualize_motif_enrichment.jpg

vignettes/figures/elmer_visualize_table_enriched_motif.jpg

vignettes/figures/gui_se_select.png

vignettes/figures/gui_exp_results.png

vignettes/figures/elmer_analysis_menu.png

vignettes/figures/elmer_analysis_final.png

vignettes/figures/elmer_analysis_motif.png

vignettes/figures/elmer_data_saved.png

vignettes/figures/elmer_data_exp.png

vignettes/figures/elmer_visualize_select1.png

vignettes/figures/elmer_analysis_message.png

inst/CITATION

inst/doc/plots_motif_enrichment.Rmd

inst/doc/plots_motif_enrichment.html

inst/doc/index.html

inst/doc/analysis_gui.Rmd

inst/doc/analysis_regulatory_tf.html

inst/doc/plots_heatmap.R

inst/doc/plots_heatmap.html

inst/doc/plots_TF.html

inst/doc/plots_TF.R inst/doc/plots_heatmap.Rmd

inst/doc/pipe.html

inst/doc/analysis_motif_enrichment.R inst/doc/index.Rmd inst/doc/usecase.R

inst/doc/plots_scatter.html

inst/doc/analysis_regulatory_tf.Rmd inst/doc/usecase.Rmd inst/doc/pipe.Rmd inst/doc/analysis_get_pair.R

inst/doc/analysis_data_input.html

inst/doc/input.Rmd inst/doc/analysis_gui.R

inst/doc/analysis_motif_enrichment.html

inst/doc/plots_schematic.html

inst/doc/input.R inst/doc/plots_scatter.Rmd inst/doc/analysis_get_pair.Rmd inst/doc/plots_scatter.R inst/doc/plots_schematic.Rmd

inst/doc/analysis_get_pair.html

inst/doc/plots_schematic.R

inst/doc/analysis_diff_meth.html

inst/doc/analysis_diff_meth.Rmd inst/doc/analysis_motif_enrichment.Rmd

inst/doc/input.html

inst/doc/analysis_diff_meth.R inst/doc/analysis_data_input.R

inst/doc/analysis_gui.html

inst/doc/analysis_data_input.Rmd inst/doc/plots_TF.Rmd inst/doc/plots_motif_enrichment.R inst/doc/index.R inst/doc/analysis_regulatory_tf.R

inst/doc/usecase.html

inst/doc/pipe.R inst/rmd/template.Rmd

inst/rmd/tabset-dropdown.html

inst/rmd/style.css

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.

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ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Files in ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

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ELMER Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Files in ELMER Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

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ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Files in ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes